Publications

  1. Sabeti, P. & Yozwiak, N. “Are we ready for a flu pandemic?The Boston Globe, 2019.

  2. Gire, S. K. et al. “Genomic surveillance elucidates Ebola virus origin and transmission during the 2014 outbreak,” Science, 2014.

  3. Diehl, W. E. et al. “Ebola Virus Glycoprotein with Increased Infectivity Dominated the 2013-2016 Epidemic,” Cell, 2016.

  4. Schaffner, S & Sabeti, P. “Nigeria an example of how to contain Ebola,” Boston Globe, 2014.

  5. Gire, S. K. et al. “Emerging Disease or Diagnosis?Science, 2012.

  6. Metsky, H. C. et al. “Zika virus evolution and spread in the Americas,” Nature, 2017. 

  7. Sabeti, P. & Salahi, L. “Outbreak Culture: The Ebola Crisis and the Next Epidemic,” Harvard University Press, 2018.

  8. Matranga, C. B. et al. “Enhanced methods for unbiased deep sequencing of Lassa and Ebola RNA viruses from clinical and biological samples,” Genome Biology, 2014.

  9. Metsky, H. C. et al. “Capturing sequence diversity in metagenomes with comprehensive and scalable probe design,” Nature Biotechnology, 2019.

  10. Andersen, K. G. et al. “Clinical Sequencing Uncovers Origins and Evolution of Lassa Virus,” Cell, 2015.

  11. Stremlau, M. H. et al. “Discovery of Novel Rhabdoviruses in the Blood of Healthy Individuals from West Africa,” PLOS Neglected Tropical Diseases, 2015.

  12. Park, D. J. et al. “Ebola Virus Epidemiology, Transmission, and Evolution during Seven Months in Sierra Leone,” Cell, 2015.

  13. Colubri, A. et al. “Transforming Clinical Data into Actionable Prognosis Models: Machine-Learning Framework and Field-Deployable App to Predict Outcome of Ebola Patients,” PLOS Neglected Tropical Diseases, 2016.

  14. Okokhere, P. et al. “Clinical and laboratory predictors of Lassa fever outcome in a dedicated treatment facility in Nigeria: a retrospective, observational cohort study,” The Lancet Infectious Diseases, 2018.

  15. Colubri, A. et al. “Machine-learning Prognostic Models from the 2014–16 Ebola Outbreak: Data-harmonization Challenges, Validation Strategies, and mHealth Applications,” EClinicalMedicine The Lancet Infectious Diseases, 2019.

  16. Reshef, D. N. et al. “Detecting novel associations in large data sets,” Science, 2011.

  17. Yozwiak, N. L., Schaffner, S. F. & Sabeti, P. C. “Data sharing: Make outbreak research open access,” Nature, 2015.

  18. Yozwiak, N. L. et al. “Roots, Not Parachutes: Research Collaborations Combat Outbreaks,” Cell, 2016.

  19. Folarin, O. A. et al. “Ebola Virus Epidemiology and Evolution in Nigeria,” The Journal of Infectious Diseases, 2016.

  20. Siddle, K. J. et al. “Genomic Analysis of Lassa Virus during an Increase in Cases in Nigeria in 2018,” New England Journal of Medicine, 2018.

  21. Ajogbasile, F. V. et al. “Real-time Metagenomic Analysis of Undiagnosed Fever Cases Unveils a Yellow Fever Outbreak in Edo State, Nigeria,” bioRxiv, 2019.

  22. Myhrvold, C. et al. “Field-deployable viral diagnostics using CRISPR-Cas13,” Science, 2018.

  23. Gootenberg, J. S. et al. “Nucleic acid detection with CRISPR-Cas13a/C2c2,” Science, 2017.

  24. Freije, C. A. et al. "Programmable Inhibition and Detection of RNA Viruses Using Cas13," Mol. Cell (2019)

  25. Boisen, M. L. et al. “Development of Prototype Filovirus Recombinant Antigen Immunoassays,” Journal of Infectious Diseases, 2015.

  26. Boisen, M. L. et al. “Field validation of recombinant antigen immunoassays for diagnosis of Lassa fever,” Scientific Reports, 2018. 

  27. Reshef, Y. A., et al. “Measuring dependence powerfully and equitably,” Journal of Machine Learning Research, 2016.

  28. Reshef, D. N., et al. “An empirical study of the maximal and total information coefficients and leading measures of dependence,” The Annals of Applied Statistics, 2018.

  29. Kotliar, D. et al. “Identifying gene expression programs of cell-type identity and cellular activity with single-cell RNA-Seq,” eLife, 2019.

  30. Sealfon, R. S. et al. “FRESCo: finding regions of excess synonymous constraint in diverse viruses,” Genome Biology, 2015.

  31. Sabeti, P. & Salahi, L. “Outbreak Culture: The Ebola Crisis and the Next Epidemic,” Harvard University Press, 2018.