Publications
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Sabeti, P. & Yozwiak, N. “Are we ready for a flu pandemic?” The Boston Globe, 2019.
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Gire, S. K. et al. “Genomic surveillance elucidates Ebola virus origin and transmission during the 2014 outbreak,” Science, 2014.
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Diehl, W. E. et al. “Ebola Virus Glycoprotein with Increased Infectivity Dominated the 2013-2016 Epidemic,” Cell, 2016.
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Schaffner, S & Sabeti, P. “Nigeria an example of how to contain Ebola,” Boston Globe, 2014.
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Gire, S. K. et al. “Emerging Disease or Diagnosis?” Science, 2012.
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Metsky, H. C. et al. “Zika virus evolution and spread in the Americas,” Nature, 2017.
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Sabeti, P. & Salahi, L. “Outbreak Culture: The Ebola Crisis and the Next Epidemic,” Harvard University Press, 2018.
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Matranga, C. B. et al. “Enhanced methods for unbiased deep sequencing of Lassa and Ebola RNA viruses from clinical and biological samples,” Genome Biology, 2014.
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Metsky, H. C. et al. “Capturing sequence diversity in metagenomes with comprehensive and scalable probe design,” Nature Biotechnology, 2019.
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Andersen, K. G. et al. “Clinical Sequencing Uncovers Origins and Evolution of Lassa Virus,” Cell, 2015.
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Stremlau, M. H. et al. “Discovery of Novel Rhabdoviruses in the Blood of Healthy Individuals from West Africa,” PLOS Neglected Tropical Diseases, 2015.
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Park, D. J. et al. “Ebola Virus Epidemiology, Transmission, and Evolution during Seven Months in Sierra Leone,” Cell, 2015.
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Colubri, A. et al. “Transforming Clinical Data into Actionable Prognosis Models: Machine-Learning Framework and Field-Deployable App to Predict Outcome of Ebola Patients,” PLOS Neglected Tropical Diseases, 2016.
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Okokhere, P. et al. “Clinical and laboratory predictors of Lassa fever outcome in a dedicated treatment facility in Nigeria: a retrospective, observational cohort study,” The Lancet Infectious Diseases, 2018.
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Colubri, A. et al. “Machine-learning Prognostic Models from the 2014–16 Ebola Outbreak: Data-harmonization Challenges, Validation Strategies, and mHealth Applications,” EClinicalMedicine The Lancet Infectious Diseases, 2019.
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Reshef, D. N. et al. “Detecting novel associations in large data sets,” Science, 2011.
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Yozwiak, N. L., Schaffner, S. F. & Sabeti, P. C. “Data sharing: Make outbreak research open access,” Nature, 2015.
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Yozwiak, N. L. et al. “Roots, Not Parachutes: Research Collaborations Combat Outbreaks,” Cell, 2016.
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Folarin, O. A. et al. “Ebola Virus Epidemiology and Evolution in Nigeria,” The Journal of Infectious Diseases, 2016.
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Siddle, K. J. et al. “Genomic Analysis of Lassa Virus during an Increase in Cases in Nigeria in 2018,” New England Journal of Medicine, 2018.
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Ajogbasile, F. V. et al. “Real-time Metagenomic Analysis of Undiagnosed Fever Cases Unveils a Yellow Fever Outbreak in Edo State, Nigeria,” bioRxiv, 2019.
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Myhrvold, C. et al. “Field-deployable viral diagnostics using CRISPR-Cas13,” Science, 2018.
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Gootenberg, J. S. et al. “Nucleic acid detection with CRISPR-Cas13a/C2c2,” Science, 2017.
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Freije, C. A. et al. "Programmable Inhibition and Detection of RNA Viruses Using Cas13," Mol. Cell (2019)
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Boisen, M. L. et al. “Development of Prototype Filovirus Recombinant Antigen Immunoassays,” Journal of Infectious Diseases, 2015.
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Boisen, M. L. et al. “Field validation of recombinant antigen immunoassays for diagnosis of Lassa fever,” Scientific Reports, 2018.
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Reshef, Y. A., et al. “Measuring dependence powerfully and equitably,” Journal of Machine Learning Research, 2016.
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Reshef, D. N., et al. “An empirical study of the maximal and total information coefficients and leading measures of dependence,” The Annals of Applied Statistics, 2018.
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Kotliar, D. et al. “Identifying gene expression programs of cell-type identity and cellular activity with single-cell RNA-Seq,” eLife, 2019.
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Sealfon, R. S. et al. “FRESCo: finding regions of excess synonymous constraint in diverse viruses,” Genome Biology, 2015.
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Sabeti, P. & Salahi, L. “Outbreak Culture: The Ebola Crisis and the Next Epidemic,” Harvard University Press, 2018.